species:   Rhsol
pid:       PID0560
parent:    Rhi-milR-172
paralog:   
locus:     KB317727.1:133079-133162
matures:   ['UUGUGGGGACUCUGUUAUAGG', 'UGUGACUUGGGCACCCACUGCC']
srr:       SRR1994873
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994873.cram KB317727.1:133079-133162

31 out of bounds
24 alignments
22 proper strand
20 stranded perfect matches

        ************************                  *************************         
UCCAGUAUUGUUGUGGGGACUCUGUUAUAGGACAGGUUUAUGAUAACCUGAUCUGUGACUUGGGCACCCACUGCCAUUGUAUUC
..((((...((.(((((..(((.((((((((.((((((......)))))).))))))))..)))..))))).)).)))).....
----------UUGUGGGGACUCUGUUAUAGG----------------------------------------------------- l=21 a=0 c
-----------------------------------------------------UGUGACUUGGGCACCCACUGCC--------- l=22 a=0 c*
----------UUGUGGGGACUCUGUUAUAGGA---------------------------------------------------- l=22 a=10 ma
----------------------------------------------------CUGUGACUUGGGCACCCACUGCC--------- l=23 a=0 ma*

--CAGUAUUGUUGUGGGGACU--------------------------------------------------------------- l=19 a=1 
--------UGUUGUGGGGACUCUGUUAUAGG----------------------------------------------------- l=23 a=1 
--------UGUUGUGGGGACUCUGUUAUAGGA---------------------------------------------------- l=24 a=1 
---------cUUGUGGGGACUCUGUUAUAGGA---------------------------------------------------- l=23 a=1 
----------UUGUGGGGACUCUGUUAUAGGA---------------------------------------------------- l=22 a=10 (ma)
----------UUGUGGGGACUCUGUUAUAGGAC--------------------------------------------------- l=23 a=3 
-------------UGGGGACUCUGUUAUAGGACAGG------------------------------------------------ l=23 a=2 
-------------UGGGGACUCUGUUAUAGGACAGu------------------------------------------------ l=23 a=1 
-------------------------------------------UAACCUGAUCUGUGACUUGGG-------------------- l=21 a=1 
------------------------------------------------UGAUCUGUGACUUGGGCACC---------------- l=20 a=1 

mb-01111
ax-1001011
ku-01
ss-111111101110
fn-111
